Mercurial > repos > imgteam > imagej2_adjust_threshold_binary

comparison imagej2_skeletonize3d_jython_script.py @ 3:2b007b1e6c1b draft default tip

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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/image_processing/imagej2 commit 8f49f3c66b5a1de99ec15e65c2519a56792f1d56
author imgteam
date Wed, 25 Sep 2024 16:06:33 +0000
parents da29019170f1
children
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2:da29019170f1 3:2b007b1e6c1b
2 2
3 from ij import IJ 3 from ij import IJ
4 4
5 # Fiji Jython interpreter implements Python 2.5 which does not 5 # Fiji Jython interpreter implements Python 2.5 which does not
6 # provide support for argparse. 6 # provide support for argparse.
7 error_log = sys.argv[-5]
8 input_file = sys.argv[-4] 7 input_file = sys.argv[-4]
9 black_background = sys.argv[-3] == "yes" 8 black_background = sys.argv[-3] == "yes"
10 tmp_output_path = sys.argv[-2] 9 tmp_output_path = sys.argv[-2]
11 output_datatype = sys.argv[-1] 10 output_datatype = sys.argv[-1]
12 11