Mercurial > repos > imgteam > imagej2_adjust_threshold_binary
diff imagej2_create_image_jython_script.py @ 1:29a4d422f32a draft
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/image_processing/imagej2 commit 2afb24f3c81d625312186750a714d702363012b5"
| author | imgteam |
|---|---|
| date | Mon, 28 Sep 2020 16:41:15 +0000 |
| parents | f1ba33cd9edf |
| children | da29019170f1 |
line wrap: on
line diff
--- a/imagej2_create_image_jython_script.py Tue Sep 17 17:09:25 2019 -0400 +++ b/imagej2_create_image_jython_script.py Mon Sep 28 16:41:15 2020 +0000 @@ -1,14 +1,15 @@ import sys + from ij import IJ # Fiji Jython interpreter implements Python 2.5 which does not # provide support for argparse. -title = sys.argv[ -6 ] -width = int( sys.argv[ -5 ] ) -height = int( sys.argv[ -4 ] ) -depth = int( sys.argv[ -3 ] ) -type = sys.argv[ -2 ].replace( '_', ' ' ) -tmp_image_path = sys.argv[ -1 ] +title = sys.argv[-6] +width = int(sys.argv[-5]) +height = int(sys.argv[-4]) +depth = int(sys.argv[-3]) +type = sys.argv[-2].replace('_', ' ') +tmp_image_path = sys.argv[-1] -imp = IJ.newImage( title, type, width, height, depth ) -IJ.save( imp, "%s" % tmp_image_path ) +imp = IJ.newImage(title, type, width, height, depth) +IJ.save(imp, "%s" % tmp_image_path)