Mercurial > repos > imgteam > imagej2_adjust_threshold_binary

diff imagej2_skeletonize3d_jython_script.py @ 2:da29019170f1 draft

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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/image_processing/imagej2 commit 57a0433defa3cbc37ab34fbb0ebcfaeb680db8d5
author imgteam
date Sun, 05 Nov 2023 10:52:33 +0000
parents 29a4d422f32a
children 2b007b1e6c1b
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line diff
--- a/imagej2_skeletonize3d_jython_script.py	Mon Sep 28 16:41:15 2020 +0000
+++ b/imagej2_skeletonize3d_jython_script.py	Sun Nov 05 10:52:33 2023 +0000
@@ -6,7 +6,7 @@
 # provide support for argparse.
 error_log = sys.argv[-5]
 input_file = sys.argv[-4]
-black_background = sys.argv[-3] == 'yes'
+black_background = sys.argv[-3] == "yes"
 tmp_output_path = sys.argv[-2]
 output_datatype = sys.argv[-1]
 
@@ -18,9 +18,9 @@
 image_processor_copy = input_image_plus_copy.getProcessor()
 
 # Set binary options.
-options = ['edm=Overwrite', 'iterations=1', 'count=1']
-if (black_background):
-    options.append('black')
+options = ["edm=Overwrite", "iterations=1", "count=1"]
+if black_background:
+    options.append("black")
 options = " ".join(options)
 IJ.run(input_image_plus_copy, "Options...", options)