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comparison imagej2_analyze_skeleton.xml @ 2:bdee06a1bcfa draft

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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/image_processing/imagej2 commit 57a0433defa3cbc37ab34fbb0ebcfaeb680db8d5
author imgteam
date Sun, 05 Nov 2023 14:21:17 +0000
parents 3272e0439968
children 50f2b961b192
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1:3272e0439968 2:bdee06a1bcfa
1 <tool id="imagej2_analyze_skeleton" name="Analyze skeleton" version="@WRAPPER_VERSION@.0"> 1 <tool id="imagej2_analyze_skeleton" name="Analyze skeleton" version="@WRAPPER_VERSION@.1">
2 <description></description> 2 <description>with ImageJ2</description>
3 <macros> 3 <macros>
4 <import>imagej2_macros.xml</import> 4 <import>imagej2_macros.xml</import>
5 </macros> 5 </macros>
6 <edam_operations>
7 <edam_operation>operation_3443</edam_operation>
8 </edam_operations>
9 <xrefs>
10 <xref type="bio.tools">imagej</xref>
11 <xref type="biii">imagej2</xref>
12 </xrefs>
6 <expand macro="fiji_requirements"/> 13 <expand macro="fiji_requirements"/>
7 <command detect_errors="exit_code"><![CDATA[ 14 <command detect_errors="exit_code"><![CDATA[
8 #import os 15 #import os
9 #set error_log = 'output_log.txt' 16 #set error_log = 'output_log.txt'
10 #set input_sans_ext = $os.path.splitext($os.path.basename($input.file_name))[0] 17 #set input_sans_ext = $os.path.splitext($os.path.basename($input.file_name))[0]