Mercurial > repos > imgteam > imagej2_bunwarpj_align

comparison imagej2_adjust_threshold_binary_jython_script.py @ 2:0a0d2dfd17e0 draft

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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/image_processing/imagej2 commit 57a0433defa3cbc37ab34fbb0ebcfaeb680db8d5
author imgteam
date Sun, 05 Nov 2023 10:51:33 +0000
parents e9243cad1d67
children 711adedc5bb8
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1:e9243cad1d67 2:0a0d2dfd17e0
24 image_processor_copy = input_image_plus_copy.getProcessor() 24 image_processor_copy = input_image_plus_copy.getProcessor()
25 25
26 # Convert image to binary if necessary. 26 # Convert image to binary if necessary.
27 if not image_processor_copy.isBinary(): 27 if not image_processor_copy.isBinary():
28 # Convert the image to binary grayscale. 28 # Convert the image to binary grayscale.
29 IJ.run(input_image_plus_copy, "Make Binary", "iterations=1 count=1 edm=Overwrite do=Nothing") 29 IJ.run(
30 input_image_plus_copy,
31 "Make Binary",
32 "iterations=1 count=1 edm=Overwrite do=Nothing",
33 )
30 # Set the options. 34 # Set the options.
31 if black_background: 35 if black_background:
32 method_str = "%s dark" % method 36 method_str = "%s dark" % method
33 else: 37 else:
34 method_str = method 38 method_str = method