Mercurial > repos > imgteam > imagej2_bunwarpj_align

comparison imagej2_enhance_contrast_jython_script.py @ 3:711adedc5bb8 draft default tip

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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/image_processing/imagej2 commit 8f49f3c66b5a1de99ec15e65c2519a56792f1d56
author imgteam
date Wed, 25 Sep 2024 15:56:56 +0000
parents 0a0d2dfd17e0
children
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2:0a0d2dfd17e0 3:711adedc5bb8
2 2
3 from ij import IJ 3 from ij import IJ
4 4
5 # Fiji Jython interpreter implements Python 2.5 which does not 5 # Fiji Jython interpreter implements Python 2.5 which does not
6 # provide support for argparse. 6 # provide support for argparse.
7 error_log = sys.argv[-7]
8 input = sys.argv[-6] 7 input = sys.argv[-6]
9 equalize_histogram = sys.argv[-5] == "yes" 8 equalize_histogram = sys.argv[-5] == "yes"
10 saturated_pixels = sys.argv[-4] 9 saturated_pixels = sys.argv[-4]
11 normalize = sys.argv[-3] == "yes" 10 normalize = sys.argv[-3] == "yes"
12 tmp_output_path = sys.argv[-2] 11 tmp_output_path = sys.argv[-2]