Mercurial > repos > imgteam > imagej2_bunwarpj_align

comparison imagej2_sharpen_jython_script.py @ 3:711adedc5bb8 draft default tip

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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/image_processing/imagej2 commit 8f49f3c66b5a1de99ec15e65c2519a56792f1d56
author imgteam
date Wed, 25 Sep 2024 15:56:56 +0000
parents e9243cad1d67
children
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2:0a0d2dfd17e0 3:711adedc5bb8
2 2
3 from ij import IJ 3 from ij import IJ
4 4
5 # Fiji Jython interpreter implements Python 2.5 which does not 5 # Fiji Jython interpreter implements Python 2.5 which does not
6 # provide support for argparse. 6 # provide support for argparse.
7 error_log = sys.argv[-4]
8 input_file = sys.argv[-3] 7 input_file = sys.argv[-3]
9 tmp_output_path = sys.argv[-2] 8 tmp_output_path = sys.argv[-2]
10 output_datatype = sys.argv[-1] 9 output_datatype = sys.argv[-1]
11 10
12 # Open the input image file. 11 # Open the input image file.