Mercurial > repos > imgteam > imagej2_bunwarpj_compare_elastic_raw

diff imagej2_make_binary_jython_script.py @ 2:3d5f59603e13 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/image_processing/imagej2 commit 57a0433defa3cbc37ab34fbb0ebcfaeb680db8d5
author imgteam
date Sun, 05 Nov 2023 10:56:36 +0000
parents 2be338fc671e
children da91b5eaf92d
line wrap: on
line diff
--- a/imagej2_make_binary_jython_script.py	Mon Sep 28 16:44:56 2020 +0000
+++ b/imagej2_make_binary_jython_script.py	Sun Nov 05 10:56:36 2023 +0000
@@ -8,8 +8,8 @@
 input = sys.argv[-7]
 iterations = int(sys.argv[-6])
 count = int(sys.argv[-5])
-black_background = sys.argv[-4] == 'yes'
-pad_edges_when_eroding = sys.argv[-3] == 'yes'
+black_background = sys.argv[-4] == "yes"
+pad_edges_when_eroding = sys.argv[-3] == "yes"
 tmp_output_path = sys.argv[-2]
 output_datatype = sys.argv[-1]
 
@@ -21,12 +21,12 @@
 image_processor_copy = input_image_plus_copy.getProcessor()
 
 # Set binary options.
-options = ['edm=Overwrite', 'iterations=%d' % iterations, 'count=%d' % count]
+options = ["edm=Overwrite", "iterations=%d" % iterations, "count=%d" % count]
 if pad_edges_when_eroding:
-    options.append('pad')
+    options.append("pad")
 if black_background:
-    options.append('black')
-options = ' '.join(options)
+    options.append("black")
+options = " ".join(options)
 IJ.run(input_image_plus_copy, "Options...", options)
 
 # Run the command.