Mercurial > repos > imgteam > imagej2_bunwarpj_compare_elastic_raw
view imagej2_bunwarpj_compare_elastic_raw.xml @ 0:1bffabc15695 draft
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/image_processing/imagej2 commit b08f0e6d1546caaf627b21f8c94044285d5d5b9c-dirty"
author | imgteam |
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date | Tue, 17 Sep 2019 16:55:25 -0400 |
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children | 2be338fc671e |
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<?xml version='1.0' encoding='UTF-8'?> <tool id="imagej2_bunwarpj_compare_elastic_raw" name="Compare elastic and raw deformation" version="@WRAPPER_VERSION@.0"> <description>by warping index with bUnwarpJ</description> <macros> <import>imagej2_macros.xml</import> </macros> <expand macro="fiji_requirements" /> <command> <![CDATA[ python $__tool_directory__/imagej2_bunwarpj_compare_elastic_raw.py --target_image "$target_image" --target_image_format $target_image.ext --source_image "$source_image" --source_image_format $source_image.ext --target_elastic_transformation "$target_elastic_transformation" --source_raw_transformation "$source_raw_transformation" --output "$output" ]]> </command> <inputs> <param format="bmp,eps,gif,jpg,pcx,pgm,png,psd,tiff" name="target_image" type="data" label="Target image"/> <param format="bmp,eps,gif,jpg,pcx,pgm,png,psd,tiff" name="source_image" type="data" label="Source image"/> <param format="txt" name="target_elastic_transformation" type="data" label="Elastic transformation file"/> <param format="txt" name="source_raw_transformation" type="data" label="Raw transformation file"/> </inputs> <outputs> <data name="output" format="txt" label="${tool.name} (same direction) on ${on_string}: Warping index" /> </outputs> <tests> <test> <param name="target_image" value="dotblot.jpg" /> <param name="source_image" value="blobs.gif" /> <param name="target_elastic_transformation" value="target_elastic_transformation.txt" /> <param name="source_raw_transformation" value="source_raw_transformation.txt" /> <output name="output" file="warping_index_raw.txt" compare="contains" /> </test> </tests> <help> **What it does** <![CDATA[ Calculates the warping index of an elastic transformation and a raw transformation. The elastic transformation file must be in the same format as the files created with the **Save transformation** option of the **Align two images with bUnwarpJ** tool, while the raw transformation file must be in the same format as the file produced by the **Convert elastic transformation to raw with bUnwarpJ** tool. ]]> </help> <expand macro="bunwarpj_citations" /> </tool>