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comparison imagej2_bunwarpj_compose_elastic.xml @ 0:6840ce593a91 draft

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"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/image_processing/imagej2 commit b08f0e6d1546caaf627b21f8c94044285d5d5b9c-dirty"
author imgteam
date Tue, 17 Sep 2019 17:08:47 -0400
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1 <?xml version='1.0' encoding='UTF-8'?>
2 <tool id="imagej2_bunwarpj_compose_elastic" name="Compose two elastic transformations" version="@WRAPPER_VERSION@.0">
3 <description>into a raw transformation with bUnwarpJ</description>
4 <macros>
5 <import>imagej2_macros.xml</import>
6 </macros>
7 <expand macro="fiji_requirements" />
8 <command>
9 <![CDATA[
10 python $__tool_directory__/imagej2_bunwarpj_compose_elastic.py
11 --target_image "$target_image"
12 --target_image_format $target_image.ext
13 --source_image "$source_image"
14 --source_image_format $source_image.ext
15 --target_elastic_transformation "$target_elastic_transformation"
16 --source_elastic_transformation "$source_elastic_transformation"
17 --output "$output"
18 ]]>
19 </command>
20 <inputs>
21 <param format="bmp,eps,gif,jpg,pcx,pgm,png,psd,tiff" name="target_image" type="data" label="Target image"/>
22 <param format="bmp,eps,gif,jpg,pcx,pgm,png,psd,tiff" name="source_image" type="data" label="Source image"/>
23 <param format="txt" name="target_elastic_transformation" type="data" label="Target inverse transformation"/>
24 <param format="txt" name="source_elastic_transformation" type="data" label="Source direct transformation"/>
25 </inputs>
26 <outputs>
27 <data name="output" format="txt" label="${tool.name} on ${on_string}" />
28 </outputs>
29 <tests>
30 <test>
31 <param name="target_image" value="dotblot.jpg" />
32 <param name="source_image" value="blobs.gif" />
33 <param name="target_elastic_transformation" value="target_elastic_transformation.txt" />
34 <param name="source_elastic_transformation" value="source_elastic_transformation.txt" />
35 <output name="output" file="raw_transformation.txt" compare="contains"/>
36 </test>
37 </tests>
38 <help>
39 **What it does**
40
41 <![CDATA[
42 Composes two elastic transformations into a raw transformation. The input files must be in the elastic
43 transformation format (i.e., the same format format as the files created with the **Save Transformation**
44 option in the **Align two images with bUnwarpJ** tool), and the output file will be in **raw** format.
45 .
46
47 ]]>
48
49 </help>
50 <expand macro="bunwarpj_citations" />
51 </tool>