Mercurial > repos > imgteam > imagej2_bunwarpj_compose_elastic
comparison imagej2_skeletonize3d_jython_script.py @ 3:e781a17b3c14 draft default tip
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/image_processing/imagej2 commit 8f49f3c66b5a1de99ec15e65c2519a56792f1d56
author | imgteam |
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date | Wed, 25 Sep 2024 16:00:54 +0000 |
parents | 7121957d0bbf |
children |
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2:7121957d0bbf | 3:e781a17b3c14 |
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2 | 2 |
3 from ij import IJ | 3 from ij import IJ |
4 | 4 |
5 # Fiji Jython interpreter implements Python 2.5 which does not | 5 # Fiji Jython interpreter implements Python 2.5 which does not |
6 # provide support for argparse. | 6 # provide support for argparse. |
7 error_log = sys.argv[-5] | |
8 input_file = sys.argv[-4] | 7 input_file = sys.argv[-4] |
9 black_background = sys.argv[-3] == "yes" | 8 black_background = sys.argv[-3] == "yes" |
10 tmp_output_path = sys.argv[-2] | 9 tmp_output_path = sys.argv[-2] |
11 output_datatype = sys.argv[-1] | 10 output_datatype = sys.argv[-1] |
12 | 11 |