Mercurial > repos > imgteam > imagej2_bunwarpj_compose_raw
diff imagej2_bunwarpj_compose_raw.xml @ 0:93b416f8e9e3 draft
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/image_processing/imagej2 commit b08f0e6d1546caaf627b21f8c94044285d5d5b9c-dirty"
| author | imgteam |
|---|---|
| date | Tue, 17 Sep 2019 17:00:19 -0400 |
| parents | |
| children | 8c0ace7ae77c |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/imagej2_bunwarpj_compose_raw.xml Tue Sep 17 17:00:19 2019 -0400 @@ -0,0 +1,50 @@ +<?xml version='1.0' encoding='UTF-8'?> +<tool id="imagej2_bunwarpj_compose_raw" name="Compose two raw transformations" version="@WRAPPER_VERSION@.0"> + <description>into another raw transformation with bUnwarpJ</description> + <macros> + <import>imagej2_macros.xml</import> + </macros> + <expand macro="fiji_requirements" /> + <command> +<![CDATA[ + python $__tool_directory__/imagej2_bunwarpj_compose_raw.py + --target_image "$target_image" + --target_image_format $target_image.ext + --source_image "$source_image" + --source_image_format $source_image.ext + --target_raw_transformation "$target_raw_transformation" + --source_raw_transformation "$source_raw_transformation" + --output "$output" +]]> + </command> + <inputs> + <param format="bmp,eps,gif,jpg,pcx,pgm,png,psd,tiff" name="target_image" type="data" label="Target image"/> + <param format="bmp,eps,gif,jpg,pcx,pgm,png,psd,tiff" name="source_image" type="data" label="Source image"/> + <param format="txt" name="target_raw_transformation" type="data" label="Target inverse transformation"/> + <param format="txt" name="source_raw_transformation" type="data" label="Source direct transformation"/> + </inputs> + <outputs> + <data name="output" format="txt" label="${tool.name} on ${on_string}" /> + </outputs> + <tests> + <test> + <param name="target_image" value="dotblot.jpg" /> + <param name="source_image" value="blobs.gif" /> + <param name="target_raw_transformation" value="target_raw_transformation.txt" /> + <param name="source_raw_transformation" value="source_raw_transformation.txt" /> + <output name="output" file="composed_raw_transformation.txt" compare="contains"/> + </test> + </tests> + <help> +**What it does** + +<![CDATA[ +Composes two raw transformations into another raw transformation. The transformation +files must be in the **raw** format (i.e., the same format as the file created with the +**Convert elastic transformation to raw with bUnwarpJ** tool. + +]]> + + </help> + <expand macro="bunwarpj_citations" /> +</tool>