Mercurial > repos > imgteam > imagej2_bunwarpj_convert_to_raw

view imagej2_create_image_jython_script.py @ 1:7f9840d3b7e7 draft

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"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/image_processing/imagej2 commit 2afb24f3c81d625312186750a714d702363012b5"
author imgteam
date Mon, 28 Sep 2020 16:48:49 +0000
parents 95fb6fa70c2f
children 0cdd96322600
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import sys

from ij import IJ

# Fiji Jython interpreter implements Python 2.5 which does not
# provide support for argparse.
title = sys.argv[-6]
width = int(sys.argv[-5])
height = int(sys.argv[-4])
depth = int(sys.argv[-3])
type = sys.argv[-2].replace('_', ' ')
tmp_image_path = sys.argv[-1]

imp = IJ.newImage(title, type, width, height, depth)
IJ.save(imp, "%s" % tmp_image_path)