--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/imagej2_bunwarpj_raw_transform.xml	Tue Sep 17 17:03:42 2019 -0400
@@ -0,0 +1,60 @@
+<?xml version='1.0' encoding='UTF-8'?>
+<tool id="imagej2_bunwarpj_raw_transform" name="Apply raw transformation" version="@WRAPPER_VERSION@.0">
+    <description>with bUnwarpJ</description>
+    <macros>
+        <import>imagej2_macros.xml</import>
+    </macros>
+    <expand macro="fiji_requirements" />
+    <command>
+<![CDATA[
+    python $__tool_directory__/imagej2_bunwarpj_raw_transform.py
+    --target_image "$target_image"
+    --target_image_format $target_image.ext
+    --source_image "$source_image"
+    --source_image_format $source_image.ext
+    --raw_transformation $raw_transformation
+    --source_out "$source_out"
+    --source_out_datatype $source_out_datatype
+    --jython_script $__tool_directory__/imagej2_bunwarpj_raw_transform_jython_script.py
+]]>
+    </command>
+    <inputs>
+        <param format="bmp,eps,gif,jpg,pcx,pgm,png,psd,tiff" name="target_image" type="data" label="Target image"/>
+        <param format="bmp,eps,gif,jpg,pcx,pgm,png,psd,tiff" name="source_image" type="data" label="Source image"/>
+        <!-- Support for a bUnwarpJ raw transformation datatype should be added to Galaxy -->
+        <param format="txt" name="raw_transformation" type="data" label="Elastic transformation" help="As saved by bUnwarpJ in raw format"/>
+        <param name="source_out_datatype" type="select" label="Save registered source image as format">
+            <expand macro="image_datatypes" />
+        </param>
+    </inputs>
+    <outputs>
+        <data name="source_out" format="png" label="${tool.name} on ${on_string}: Registered source image">
+            <actions>
+                <action type="format">
+                    <option type="from_param" name="source_out_datatype" />
+                </action>
+            </actions>
+        </data>
+    </outputs>
+    <tests>
+        <test>
+            <param name="target_image" value="dotblot.jpg" />
+            <param name="source_image" value="blobs.gif" />
+            <param name="raw_transformation" value="source_raw_transformation.txt" />
+            <param name="source_out_datatype" value="png" />
+            <output name="source_out" file="raw_trans_registered_source1.png" compare="sim_size" />
+        </test>
+    </tests>
+    <help>
+**What it does**
+
+<![CDATA[
+Applies a raw transformation to an image, producing another image which is deformed according
+to the transformation.  The transformation file must be in the same format as the files created
+with the **Convert elastic transformation to raw with bUnwarpJ** tool.
+
+]]>
+
+    </help>
+    <expand macro="bunwarpj_citations" />
+</tool>