Mercurial > repos > imgteam > imagej2_create_image
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"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/image_processing/imagej2 commit b08f0e6d1546caaf627b21f8c94044285d5d5b9c-dirty"
author | imgteam |
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date | Tue, 17 Sep 2019 16:57:52 -0400 |
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children | 1a7c29d5fc11 |
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<?xml version='1.0' encoding='UTF-8'?> <tool id="imagej2_create_image" name="Create new image" version="@WRAPPER_VERSION@.0"> <description></description> <macros> <import>imagej2_macros.xml</import> </macros> <expand macro="fiji_requirements" /> <command> <![CDATA[ python $__tool_directory__/imagej2_create_image.py --width $width --height $height --depth $depth --image_type $image_type --image_title "$image_title" --jython_script $__tool_directory__/imagej2_create_image_jython_script.py --output_datatype $output_datatype --out_fname "$output" ]]> </command> <inputs> <expand macro="image_type" /> <param name="image_title" type="text" label="Image title" help="Leave blank for no title" /> <param name="width" type="integer" value="512" min="1" label="Image width in pixels" /> <param name="height" type="integer" value="512" min="1" label="Image height in pixels" /> <param name="depth" type="integer" value="1" min="1" label="Image depth" help="Specifies the number of stack slices" /> <param name="output_datatype" type="select" label="Save as format"> <expand macro="image_datatypes" /> </param> </inputs> <outputs> <data name="output" format="jpg"> <actions> <action type="format"> <option type="from_param" name="output_datatype" /> </action> </actions> </data> </outputs> <tests> <test> <param name="image_type" value="8-bit_ramp" /> <param name="image_title" value="MyTitle" /> <param name="width" value="256" /> <param name="height" value="256" /> <param name="depth" value="1" /> <param name="output_datatype" value="jpg" /> <output name="output" file="create_image1.jpg" ftype="jpg" /> </test> </tests> <help> **What it does** <![CDATA[ Creates a new image based on the following entries. - **Type** specifies the image type "8-bit", "16-bit", "32-bit" or "RGB" with options - **Title** is associated with the image, but not displayed in the image - **Width** specifies the width of the image in pixels - **Height** specifies the height of the image in pixels - **Depth** specifies the number of stack slices - **Format** specifies the image format "jpg", "png", etc ]]> </help> <expand macro="fiji_headless_citations" /> </tool>