Mercurial > repos > imgteam > imagej2_crop

diff imagej2_create_image_jython_script.py @ 0:db3066ae9b09 draft default tip

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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/image_processing/imagej2 commit 8f49f3c66b5a1de99ec15e65c2519a56792f1d56
author imgteam
date Wed, 25 Sep 2024 16:28:45 +0000 (7 months ago)
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/imagej2_create_image_jython_script.py	Wed Sep 25 16:28:45 2024 +0000
@@ -0,0 +1,15 @@
+import sys
+
+from ij import IJ
+
+# Fiji Jython interpreter implements Python 2.5 which does not
+# provide support for argparse.
+title = sys.argv[-6]
+width = int(sys.argv[-5])
+height = int(sys.argv[-4])
+depth = int(sys.argv[-3])
+type = sys.argv[-2].replace("_", " ")
+tmp_image_path = sys.argv[-1]
+
+imp = IJ.newImage(title, type, width, height, depth)
+IJ.save(imp, "%s" % tmp_image_path)