Mercurial > repos > imgteam > imagej2_find_maxima
diff imagej2_create_image_jython_script.py @ 0:29b39f5b0e69 draft
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/image_processing/imagej2 commit b08f0e6d1546caaf627b21f8c94044285d5d5b9c-dirty"
author | imgteam |
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date | Tue, 17 Sep 2019 17:01:44 -0400 |
parents | |
children | e2622ebb5ce4 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/imagej2_create_image_jython_script.py Tue Sep 17 17:01:44 2019 -0400 @@ -0,0 +1,14 @@ +import sys +from ij import IJ + +# Fiji Jython interpreter implements Python 2.5 which does not +# provide support for argparse. +title = sys.argv[ -6 ] +width = int( sys.argv[ -5 ] ) +height = int( sys.argv[ -4 ] ) +depth = int( sys.argv[ -3 ] ) +type = sys.argv[ -2 ].replace( '_', ' ' ) +tmp_image_path = sys.argv[ -1 ] + +imp = IJ.newImage( title, type, width, height, depth ) +IJ.save( imp, "%s" % tmp_image_path )