Mercurial > repos > imgteam > imagej2_make_binary

comparison imagej2_create_image_jython_script.py @ 1:6e8be21a505c draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/image_processing/imagej2 commit 2afb24f3c81d625312186750a714d702363012b5"
author imgteam
date Mon, 28 Sep 2020 16:53:58 +0000
parents baa308e2533a
children d3e8ef83f3bf
comparison
equal deleted inserted replaced
0:baa308e2533a 1:6e8be21a505c
1 import sys 1 import sys
2
2 from ij import IJ 3 from ij import IJ
3 4
4 # Fiji Jython interpreter implements Python 2.5 which does not 5 # Fiji Jython interpreter implements Python 2.5 which does not
5 # provide support for argparse. 6 # provide support for argparse.
6 title = sys.argv[ -6 ] 7 title = sys.argv[-6]
7 width = int( sys.argv[ -5 ] ) 8 width = int(sys.argv[-5])
8 height = int( sys.argv[ -4 ] ) 9 height = int(sys.argv[-4])
9 depth = int( sys.argv[ -3 ] ) 10 depth = int(sys.argv[-3])
10 type = sys.argv[ -2 ].replace( '_', ' ' ) 11 type = sys.argv[-2].replace('_', ' ')
11 tmp_image_path = sys.argv[ -1 ] 12 tmp_image_path = sys.argv[-1]
12 13
13 imp = IJ.newImage( title, type, width, height, depth ) 14 imp = IJ.newImage(title, type, width, height, depth)
14 IJ.save( imp, "%s" % tmp_image_path ) 15 IJ.save(imp, "%s" % tmp_image_path)