Mercurial > repos > imgteam > imagej2_make_binary

diff imagej2_create_image_jython_script.py @ 0:baa308e2533a draft

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"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/image_processing/imagej2 commit b08f0e6d1546caaf627b21f8c94044285d5d5b9c-dirty"
author imgteam
date Tue, 17 Sep 2019 17:07:31 -0400
parents
children 6e8be21a505c
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/imagej2_create_image_jython_script.py	Tue Sep 17 17:07:31 2019 -0400
@@ -0,0 +1,14 @@
+import sys
+from ij import IJ
+
+# Fiji Jython interpreter implements Python 2.5 which does not
+# provide support for argparse.
+title = sys.argv[ -6 ]
+width = int( sys.argv[ -5 ] )
+height = int( sys.argv[ -4 ] )
+depth = int( sys.argv[ -3 ] )
+type = sys.argv[ -2 ].replace( '_', ' ' )
+tmp_image_path = sys.argv[ -1 ]
+
+imp = IJ.newImage( title, type, width, height, depth )
+IJ.save( imp, "%s" % tmp_image_path )