Mercurial > repos > imgteam > imagej2_math
diff imagej2_make_binary_jython_script.py @ 2:d7fbe9662213 draft
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/image_processing/imagej2 commit 57a0433defa3cbc37ab34fbb0ebcfaeb680db8d5
author | imgteam |
---|---|
date | Sun, 05 Nov 2023 10:58:39 +0000 |
parents | d48c999b3b96 |
children | d426c25946d4 |
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--- a/imagej2_make_binary_jython_script.py Mon Sep 28 16:46:43 2020 +0000 +++ b/imagej2_make_binary_jython_script.py Sun Nov 05 10:58:39 2023 +0000 @@ -8,8 +8,8 @@ input = sys.argv[-7] iterations = int(sys.argv[-6]) count = int(sys.argv[-5]) -black_background = sys.argv[-4] == 'yes' -pad_edges_when_eroding = sys.argv[-3] == 'yes' +black_background = sys.argv[-4] == "yes" +pad_edges_when_eroding = sys.argv[-3] == "yes" tmp_output_path = sys.argv[-2] output_datatype = sys.argv[-1] @@ -21,12 +21,12 @@ image_processor_copy = input_image_plus_copy.getProcessor() # Set binary options. -options = ['edm=Overwrite', 'iterations=%d' % iterations, 'count=%d' % count] +options = ["edm=Overwrite", "iterations=%d" % iterations, "count=%d" % count] if pad_edges_when_eroding: - options.append('pad') + options.append("pad") if black_background: - options.append('black') -options = ' '.join(options) + options.append("black") +options = " ".join(options) IJ.run(input_image_plus_copy, "Options...", options) # Run the command.