Mercurial > repos > imgteam > imagej2_noise
view imagej2_create_image_jython_script.py @ 2:756e062741dc draft
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/image_processing/imagej2 commit 57a0433defa3cbc37ab34fbb0ebcfaeb680db8d5
| author | imgteam |
|---|---|
| date | Sun, 05 Nov 2023 10:57:39 +0000 |
| parents | 7a44772cc89f |
| children |
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import sys from ij import IJ # Fiji Jython interpreter implements Python 2.5 which does not # provide support for argparse. title = sys.argv[-6] width = int(sys.argv[-5]) height = int(sys.argv[-4]) depth = int(sys.argv[-3]) type = sys.argv[-2].replace("_", " ") tmp_image_path = sys.argv[-1] imp = IJ.newImage(title, type, width, height, depth) IJ.save(imp, "%s" % tmp_image_path)