diff imagej2_sharpen.xml @ 0:a84f2cbf091b draft

"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/image_processing/imagej2 commit b08f0e6d1546caaf627b21f8c94044285d5d5b9c-dirty"
author imgteam
date Tue, 17 Sep 2019 17:08:08 -0400
parents
children 4c43ba752312
line wrap: on
line diff
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/imagej2_sharpen.xml	Tue Sep 17 17:08:08 2019 -0400
@@ -0,0 +1,49 @@
+<?xml version='1.0' encoding='UTF-8'?>
+<tool id="imagej2_sharpen" name="Sharpen" version="@WRAPPER_VERSION@.0">
+    <description></description>
+    <macros>
+        <import>imagej2_macros.xml</import>
+    </macros>
+    <expand macro="fiji_requirements" />
+    <command>
+<![CDATA[
+    python $__tool_directory__/imagej2_sharpen.py
+    --input "$input"
+    --input_datatype $input.ext
+    --jython_script $__tool_directory__/imagej2_sharpen_jython_script.py
+    --output_datatype $output.ext
+    --output "$output"
+]]>
+    </command>
+    <inputs>
+        <param format="bmp,eps,gif,jpg,pcx,pgm,png,psd,tiff" name="input" type="data" label="Select image"/>
+    </inputs>
+    <outputs>
+        <data name="output" format_source="input" label="${tool.name} on ${on_string}"/>
+    </outputs>
+    <tests>
+        <test>
+            <param name="input" value="blobs.gif" />
+            <output name="output" file="blobs_sharpen.gif" compare="sim_size" />
+        </test>
+    </tests>
+    <help>
+
+**What it does**
+
+<![CDATA[
+
+Increases contrast and accentuates detail in the image, but may also accentuate noise. This filter
+uses the following weighting factors to replace each pixel with a weighted average of the 3x3 neighborhood.
+
+``-1 -1 -1``
+
+``-1 12 -1``
+
+``-1 -1 -1``
+
+]]>
+
+    </help>
+    <expand macro="fiji_headless_citations" />
+</tool>