Mercurial > repos > imgteam > imagej2_skeletonize3d

diff imagej2_watershed_binary_jython_script.py @ 2:49b5288dcd8c draft

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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/image_processing/imagej2 commit 57a0433defa3cbc37ab34fbb0ebcfaeb680db8d5
author imgteam
date Sun, 05 Nov 2023 14:26:52 +0000
parents 768825d9034a
children 5f5b7185bc16
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line diff
--- a/imagej2_watershed_binary_jython_script.py	Mon Sep 28 17:01:19 2020 +0000
+++ b/imagej2_watershed_binary_jython_script.py	Sun Nov 05 14:26:52 2023 +0000
@@ -6,7 +6,7 @@
 # provide support for argparse.
 error_log = sys.argv[-5]
 input = sys.argv[-4]
-black_background = sys.argv[-3] == 'yes'
+black_background = sys.argv[-3] == "yes"
 tmp_output_path = sys.argv[-2]
 output_datatype = sys.argv[-1]
 
@@ -18,9 +18,9 @@
 image_processor_copy = input_image_plus_copy.getProcessor()
 
 # Set binary options.
-options = ['edm=Overwrite', 'iterations=1', 'count=1']
-if (black_background):
-    options.append('black')
+options = ["edm=Overwrite", "iterations=1", "count=1"]
+if black_background:
+    options.append("black")
 options = " ".join(options)
 IJ.run(input_image_plus_copy, "Options...", options)