Mercurial > repos > imgteam > imagej2_smooth
comparison imagej2_smooth.xml @ 0:dd20ee3092e3 draft
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/image_processing/imagej2 commit b08f0e6d1546caaf627b21f8c94044285d5d5b9c-dirty"
| author | imgteam |
|---|---|
| date | Tue, 17 Sep 2019 17:04:21 -0400 |
| parents | |
| children | 53fb6f4afcc8 |
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| -1:000000000000 | 0:dd20ee3092e3 |
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| 1 <?xml version='1.0' encoding='UTF-8'?> | |
| 2 <tool id="imagej2_smooth" name="Smooth" version="@WRAPPER_VERSION@.0"> | |
| 3 <description></description> | |
| 4 <macros> | |
| 5 <import>imagej2_macros.xml</import> | |
| 6 </macros> | |
| 7 <expand macro="fiji_requirements" /> | |
| 8 <command> | |
| 9 <![CDATA[ | |
| 10 python $__tool_directory__/imagej2_smooth.py | |
| 11 --input "$input" | |
| 12 --input_datatype $input.ext | |
| 13 --jython_script $__tool_directory__/imagej2_smooth_jython_script.py | |
| 14 --output_datatype $output.ext | |
| 15 --output "$output" | |
| 16 ]]> | |
| 17 </command> | |
| 18 <inputs> | |
| 19 <param format="bmp,eps,gif,jpg,pcx,pgm,png,psd,tiff" name="input" type="data" label="Select image"/> | |
| 20 </inputs> | |
| 21 <outputs> | |
| 22 <data name="output" format_source="input" label="${tool.name} on ${on_string}"/> | |
| 23 </outputs> | |
| 24 <tests> | |
| 25 <test> | |
| 26 <param name="input" value="blobs.gif" /> | |
| 27 <output name="output" file="blobs_smooth.gif" compare="sim_size" /> | |
| 28 </test> | |
| 29 </tests> | |
| 30 <help> | |
| 31 | |
| 32 **What it does** | |
| 33 | |
| 34 <![CDATA[ | |
| 35 | |
| 36 Blurs the image by replacing each pixel with the average of its 3x3 neighborhood. | |
| 37 | |
| 38 ]]> | |
| 39 | |
| 40 </help> | |
| 41 <expand macro="fiji_headless_citations" /> | |
| 42 </tool> |