Mercurial > repos > imgteam > imagej2_smooth
diff imagej2_smooth.xml @ 0:dd20ee3092e3 draft
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/image_processing/imagej2 commit b08f0e6d1546caaf627b21f8c94044285d5d5b9c-dirty"
author | imgteam |
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date | Tue, 17 Sep 2019 17:04:21 -0400 |
parents | |
children | 53fb6f4afcc8 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/imagej2_smooth.xml Tue Sep 17 17:04:21 2019 -0400 @@ -0,0 +1,42 @@ +<?xml version='1.0' encoding='UTF-8'?> +<tool id="imagej2_smooth" name="Smooth" version="@WRAPPER_VERSION@.0"> + <description></description> + <macros> + <import>imagej2_macros.xml</import> + </macros> + <expand macro="fiji_requirements" /> + <command> +<![CDATA[ + python $__tool_directory__/imagej2_smooth.py + --input "$input" + --input_datatype $input.ext + --jython_script $__tool_directory__/imagej2_smooth_jython_script.py + --output_datatype $output.ext + --output "$output" +]]> + </command> + <inputs> + <param format="bmp,eps,gif,jpg,pcx,pgm,png,psd,tiff" name="input" type="data" label="Select image"/> + </inputs> + <outputs> + <data name="output" format_source="input" label="${tool.name} on ${on_string}"/> + </outputs> + <tests> + <test> + <param name="input" value="blobs.gif" /> + <output name="output" file="blobs_smooth.gif" compare="sim_size" /> + </test> + </tests> + <help> + +**What it does** + +<![CDATA[ + +Blurs the image by replacing each pixel with the average of its 3x3 neighborhood. + +]]> + + </help> + <expand macro="fiji_headless_citations" /> +</tool>