Mercurial > repos > imgteam > imagej2_watershed_binary

comparison imagej2_analyze_skeleton_jython_script.py @ 3:29aca8eebdaa draft default tip

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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/image_processing/imagej2 commit 8f49f3c66b5a1de99ec15e65c2519a56792f1d56
author imgteam
date Wed, 25 Sep 2024 16:00:05 +0000
parents aeae7e29d525
children
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2:aeae7e29d525 3:29aca8eebdaa
119 outf.close() 119 outf.close()
120 120
121 121
122 # Fiji Jython interpreter implements Python 2.5 which does not 122 # Fiji Jython interpreter implements Python 2.5 which does not
123 # provide support for argparse. 123 # provide support for argparse.
124 error_log = sys.argv[-8]
125 input = sys.argv[-7] 124 input = sys.argv[-7]
126 black_background = sys.argv[-6] == "yes" 125 black_background = sys.argv[-6] == "yes"
127 prune_cycle_method = sys.argv[-5] 126 prune_cycle_method = sys.argv[-5]
128 prune_ends = sys.argv[-4] == "yes" 127 prune_ends = sys.argv[-4] == "yes"
129 calculate_largest_shortest_path = sys.argv[-3] == "yes" 128 calculate_largest_shortest_path = sys.argv[-3] == "yes"