Mercurial > repos > imgteam > imagej2_watershed_binary
view imagej2_create_image_jython_script.py @ 3:29aca8eebdaa draft default tip
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/image_processing/imagej2 commit 8f49f3c66b5a1de99ec15e65c2519a56792f1d56
| author | imgteam |
|---|---|
| date | Wed, 25 Sep 2024 16:00:05 +0000 |
| parents | aeae7e29d525 |
| children |
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import sys from ij import IJ # Fiji Jython interpreter implements Python 2.5 which does not # provide support for argparse. title = sys.argv[-6] width = int(sys.argv[-5]) height = int(sys.argv[-4]) depth = int(sys.argv[-3]) type = sys.argv[-2].replace("_", " ") tmp_image_path = sys.argv[-1] imp = IJ.newImage(title, type, width, height, depth) IJ.save(imp, "%s" % tmp_image_path)