Mercurial > repos > imgteam > label_to_binary
comparison label_to_binary.py @ 0:5da15c3bafed draft default tip
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/label_to_binary/ commit 0a64a49d4a0ac3438544244a8b871be2fc144766
| author | imgteam |
|---|---|
| date | Wed, 13 Mar 2024 14:55:31 +0000 |
| parents | |
| children |
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| -1:000000000000 | 0:5da15c3bafed |
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| 1 import argparse | |
| 2 | |
| 3 import numpy as np | |
| 4 import skimage.io | |
| 5 | |
| 6 | |
| 7 if __name__ == '__main__': | |
| 8 | |
| 9 parser = argparse.ArgumentParser() | |
| 10 parser.add_argument('input', type=str) | |
| 11 parser.add_argument('bg_label', type=int) | |
| 12 parser.add_argument('output', type=str) | |
| 13 args = parser.parse_args() | |
| 14 | |
| 15 im = skimage.io.imread(args.input) | |
| 16 im = (im != args.bg_label) | |
| 17 im = (im * 255).astype(np.uint8) | |
| 18 skimage.io.imsave(args.output, im) |