Mercurial > repos > imgteam > label_to_binary
view label_to_binary.py @ 0:5da15c3bafed draft default tip
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/label_to_binary/ commit 0a64a49d4a0ac3438544244a8b871be2fc144766
author | imgteam |
---|---|
date | Wed, 13 Mar 2024 14:55:31 +0000 |
parents | |
children |
line wrap: on
line source
import argparse import numpy as np import skimage.io if __name__ == '__main__': parser = argparse.ArgumentParser() parser.add_argument('input', type=str) parser.add_argument('bg_label', type=int) parser.add_argument('output', type=str) args = parser.parse_args() im = skimage.io.imread(args.input) im = (im != args.bg_label) im = (im * 255).astype(np.uint8) skimage.io.imsave(args.output, im)