Mercurial > repos > imgteam > labelimage2points
comparison labelimage2points.xml @ 0:39e6d6a84257 draft
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/labelimage2points/ commit c3f4b766f03770f094fda6bda0a5882c0ebd4581
| author | imgteam |
|---|---|
| date | Sat, 09 Feb 2019 14:36:17 -0500 |
| parents | |
| children | 07525a7d9ea0 |
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| -1:000000000000 | 0:39e6d6a84257 |
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| 1 <tool id="ip_labelimage_to_points" name="Label to Points" version="0.1"> | |
| 2 <description>Converts label image to points</description> | |
| 3 <requirements> | |
| 4 <requirement type="package" version="0.14.2">scikit-image</requirement> | |
| 5 <requirement type="package" version="0.21.0">pandas</requirement> | |
| 6 </requirements> | |
| 7 <command> | |
| 8 <![CDATA[ | |
| 9 python '$__tool_directory__/labelimage2points.py' '$input' '$output' | |
| 10 ]]> | |
| 11 </command> | |
| 12 <inputs> | |
| 13 <param name="input" type="data" format="tiff,png,jpg,bmp" label="Label image file"/> | |
| 14 </inputs> | |
| 15 <outputs> | |
| 16 <data format="tabular" name="output"/> | |
| 17 </outputs> | |
| 18 <tests> | |
| 19 <test> | |
| 20 <param name="input" value="label.tif" /> | |
| 21 <output name="output" value="points.tsv" ftype="tabular" /> | |
| 22 </test> | |
| 23 </tests> | |
| 24 <help> | |
| 25 **What it does** | |
| 26 | |
| 27 Calculates the center of mass for all differently colored regions in the image. | |
| 28 </help> | |
| 29 <citations> | |
| 30 <citation type="doi">10.1016/j.jbiotec.2017.07.019</citation> | |
| 31 </citations> | |
| 32 </tool> |