Mercurial > repos > imgteam > labelimage2points
view labelimage2points.xml @ 1:07525a7d9ea0 draft
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/labelimage2points/ commit b2acc1845a25828181597fe5b6982fe116a7796d
author | imgteam |
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date | Mon, 22 Jul 2019 05:03:12 -0400 |
parents | 39e6d6a84257 |
children | 3b7460735223 |
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<tool id="ip_labelimage_to_points" name="Label to Points" version="0.2"> <description>Converts label image to points</description> <requirements> <requirement type="package" version="0.14.2">scikit-image</requirement> <requirement type="package" version="0.21.0">pandas</requirement> <requirement type="package" version="0.15.1">tifffile</requirement> </requirements> <command detect_errors="aggressive"> <![CDATA[ python '$__tool_directory__/labelimage2points.py' '$input' '$output' ]]> </command> <inputs> <param name="input" type="data" format="tiff,png,jpg,bmp" label="Label image file"/> </inputs> <outputs> <data format="tabular" name="output"/> </outputs> <tests> <test> <param name="input" value="label.tif" /> <output name="output" value="points.tsv" ftype="tabular" /> </test> </tests> <help> **What it does** Calculates the center of mass for all differently colored regions in the image. </help> <citations> <citation type="doi">10.1016/j.jbiotec.2017.07.019</citation> </citations> </tool>