Mercurial > repos > imgteam > landmark_registration
comparison landmark_registration.xml @ 0:a71239f3543a draft
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/landmark_registration/ commit d5df0e2f37920d09b5d942a7b128041ee1f0b6f5
| author | imgteam |
|---|---|
| date | Tue, 12 Feb 2019 08:35:45 -0500 |
| parents | |
| children | 4e089a0983b1 |
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| -1:000000000000 | 0:a71239f3543a |
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| 1 <tool id="ip_landmark_registration" name="Landmark Registration" version="0.0.2"> | |
| 2 <description>Landmark Registration</description> | |
| 3 <requirements> | |
| 4 <requirement type="package" version="0.14.2">scikit-image</requirement> | |
| 5 <requirement type="package" version="0.23.4">pandas</requirement> | |
| 6 <requirement type="package" version="1.15.4">numpy</requirement> | |
| 7 </requirements> | |
| 8 <command><![CDATA[ | |
| 9 python '$__tool_directory__/landmark_registration.py' | |
| 10 --residual_threshold $residual_threshold | |
| 11 --max_trials $max_trials | |
| 12 '$points_file1' | |
| 13 '$points_file2' | |
| 14 '$warp_matrix' | |
| 15 ]]></command> | |
| 16 <inputs> | |
| 17 <param name="points_file1" type="data" format="tabular" label="Path to tab-separated file with src points" /> | |
| 18 <param name="points_file2" type="data" format="tabular" label="Path to tab-separated file with dst points" /> | |
| 19 <param name="residual_threshold" type="float" value="2" label="Maximum distance for a data point to be classified as an inlier." /> | |
| 20 <param name="max_trials" type="integer" value="100" label="Maximum number of iterations for random sample selection." /> | |
| 21 </inputs> | |
| 22 <outputs> | |
| 23 <data format="tabular" name="warp_matrix" /> | |
| 24 </outputs> | |
| 25 <tests> | |
| 26 <test> | |
| 27 <param name="points_file1" value="points1.tsv"/> | |
| 28 <param name="points_file2" value="points2.tsv"/> | |
| 29 <param name="residual_threshold" value="2"/> | |
| 30 <param name="max_trials" value="100"/> | |
| 31 <output name="warp_matrix" value="warp.tsv" ftype="tabular" compare="diff" lines_diff="6"/> | |
| 32 </test> | |
| 33 </tests> | |
| 34 <help> | |
| 35 **What it does** | |
| 36 | |
| 37 This tool estimates the transformation matrix between two sets of 2d points. | |
| 38 </help> | |
| 39 <citations> | |
| 40 <citation type="doi">10.1016/j.jbiotec.2017.07.019</citation> | |
| 41 </citations> | |
| 42 </tool> |