Mercurial > repos > imgteam > mergeneighboursinlabelimage

comparison mergeneighboursinlabelimage.xml @ 1:c6a6ab7c9940 draft

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planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/\mergeneighboursinlabelimage commit b2acc1845a25828181597fe5b6982fe116a7796d
author imgteam
date Mon, 22 Jul 2019 05:03:33 -0400
parents 07ac39c0e949
children 9cbddb13fb9e
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0:07ac39c0e949 1:c6a6ab7c9940
1 <tool id="ip_merge_neighbours_in_label" name="Merge Neighbours in Label" version="0.2"> 1 <tool id="ip_merge_neighbours_in_label" name="Merge Neighbours in Label" version="0.3">
2 <description>Merge Neighbours in Label Image</description> 2 <description>Merge Neighbours in Label Image</description>
3 <requirements> 3 <requirements>
4 <requirement type="package" version="0.14.2">scikit-image</requirement> 4 <requirement type="package" version="0.14.2">scikit-image</requirement>
5 <requirement type="package" version="1.15.4">numpy</requirement> 5 <requirement type="package" version="1.15.4">numpy</requirement>
6 <requirement type="package" version="0.15.1">tifffile</requirement>
6 </requirements> 7 </requirements>
7 <command> 8 <command detect_errors="aggressive">
8 <![CDATA[ 9 <![CDATA[
9 python '$__tool_directory__/mergeneighboursinlabelimage.py' '$input' ./tmp.tiff -c $c 10 python '$__tool_directory__/mergeneighboursinlabelimage.py' '$input' ./tmp.tiff -c $c
10 ]]> 11 ]]>
11 </command> 12 </command>
12 <inputs> 13 <inputs>
19 <tests> 20 <tests>
20 <test> 21 <test>
21 <param name="input" value="galaxyIcon_noText.tif"/> 22 <param name="input" value="galaxyIcon_noText.tif"/>
22 <param name="c" value="10"/> 23 <param name="c" value="10"/>
23 <output name="output" file="out.tiff" ftype="tiff" compare="sim_size"/> 24 <output name="output" file="out.tiff" ftype="tiff" compare="sim_size"/>
24 </test> 25 </test>
25 </tests> 26 </tests>
26 <help> 27 <help>
27 **What it does** 28 **What it does**
28 29
29 This tools merges nearby objects in a label image using the minimum pixel distance. 30 This tools merges nearby objects in a label image using the minimum pixel distance.