Mercurial > repos > imgteam > orientationpy

diff orientationpy-cli.py @ 2:cc8fe984ec3e draft default tip

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planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/orientationpy commit c86a1b93cb7732f7331a981d13465653cc1a2790
author imgteam
date Wed, 24 Apr 2024 08:12:45 +0000
parents 214f548481eb
children
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--- a/orientationpy-cli.py	Thu Apr 04 15:25:49 2024 +0000
+++ b/orientationpy-cli.py	Wed Apr 24 08:12:45 2024 +0000
@@ -1,6 +1,7 @@
 import argparse
 import csv
 
+import giatools.io
 import numpy as np
 import orientationpy
 import skimage.io
@@ -19,7 +20,7 @@
     parser.add_argument('--output_angle_tsv', type=str, default=None)
     args = parser.parse_args()
 
-    im = skimage.io.imread(args.input)
+    im = giatools.io.imread(args.input)
     im = skimage.util.img_as_float(im)
     im = np.squeeze(im)
     assert im.ndim == 2