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comparison overlay_images.xml @ 7:8dc02c854048 draft

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planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/overlay_images/ commit 60cf803236ef94f414056823688e6fd008b7a1b6
author imgteam
date Thu, 25 Apr 2024 10:57:38 +0000
parents 2495f8b2aefd
children ca362a9bfa20
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6:2495f8b2aefd 7:8dc02c854048
2 <description></description> 2 <description></description>
3 <macros> 3 <macros>
4 <import>creators.xml</import> 4 <import>creators.xml</import>
5 <import>tests.xml</import> 5 <import>tests.xml</import>
6 <token name="@TOOL_VERSION@">0.0.4</token> 6 <token name="@TOOL_VERSION@">0.0.4</token>
7 <token name="@VERSION_SUFFIX@">2</token> 7 <token name="@VERSION_SUFFIX@">3</token>
8 </macros> 8 </macros>
9 <creator> 9 <creator>
10 <expand macro="creators/bmcv"/> 10 <expand macro="creators/bmcv"/>
11 <expand macro="creators/thawn"/> 11 <expand macro="creators/thawn"/>
12 </creator> 12 </creator>
49 <option value="coloc_vis" selected="True">Colocalization</option> 49 <option value="coloc_vis" selected="True">Colocalization</option>
50 <option value="blending">Linear blending</option> 50 <option value="blending">Linear blending</option>
51 <option value="seg_contour">Segmentation contours over image</option> 51 <option value="seg_contour">Segmentation contours over image</option>
52 </param> 52 </param>
53 <when value="coloc_vis"> 53 <when value="coloc_vis">
54 <param name="im1" type="data" format="tiff,png" label="Image #1 (red channel)" /> 54 <param name="im1" type="data" format="tiff,png" label="Image 1 (red channel)" />
55 <param name="im2" type="data" format="tiff,png" label="Image #2 (green channel)" /> 55 <param name="im2" type="data" format="tiff,png" label="Image 2 (green channel)" />
56 </when> 56 </when>
57 <when value="blending"> 57 <when value="blending">
58 <param name="im1" type="data" format="tiff,png" label="Image #1" /> 58 <param name="im1" type="data" format="tiff,png" label="Image 1" />
59 <param name="im2" type="data" format="tiff,png" label="Image #2" /> 59 <param name="im2" type="data" format="tiff,png" label="Image 2" />
60 <param name="alpha" type="float" value="0.5" min="0.0" max="1.0" label="The weight for blending: I_out = (1 - w) * I_1 + w * I_2."/> 60 <param name="alpha" type="float" value="0.5" min="0.0" max="1.0" label="The weight for blending: result = (1 - weight) * image1 + weight * image2." />
61 </when> 61 </when>
62 <when value="seg_contour"> 62 <when value="seg_contour">
63 <param name="im1" type="data" format="tiff,png" label="Intensity image" /> 63 <param name="im1" type="data" format="tiff,png" label="Intensity image" />
64 <param name="im2" type="data" format="tiff,png" label="Label image" /> 64 <param name="im2" type="data" format="tiff,png" label="Label image" />
65 <param name="thickness" type="integer" value="2" min="1" label="Contour thickness (in pixels)" /> 65 <param name="thickness" type="integer" value="2" min="1" label="Contour thickness (in pixels)" />