Mercurial > repos > imgteam > overlay_images
diff overlay_images.py @ 4:37662cbf44b8 draft
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/overlay_images/ commit 85185439087caafebf1c75dc78b61a2a1f181225
author | imgteam |
---|---|
date | Fri, 17 Nov 2023 23:34:57 +0000 |
parents | b74693340624 |
children | 2495f8b2aefd |
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--- a/overlay_images.py Wed Nov 08 19:57:15 2023 +0000 +++ b/overlay_images.py Fri Nov 17 23:34:57 2023 +0000 @@ -33,15 +33,17 @@ img = np.squeeze(img) assert img.ndim == 2 or (img.ndim == 3 and img.shape[-1] in (3, 4)) if str(img.dtype).startswith('float'): - img = np.round(img * 255).astype('uint8') - elif img.dtype == 'uint16': - img = img // 256 - elif img.dtype != 'uint8': + img = np.round(img * 255).astype(np.uint8) + elif img.dtype == np.uint16: + img = (img // 256).astype(np.uint8) + elif img.dtype != np.uint8: raise ValueError(f'unknown dtype: {img.dtype}') if img.ndim == 2: - return np.dstack([img] * 3).copy() + result = np.dstack([img] * 3).copy() else: - return img[:, :, :3].copy() + result = img[:, :, :3].copy() + assert result.dtype == np.uint8, result.dtype + return result def coloc_vis(in_red_fn, in_green_fn, out_fn):