Mercurial > repos > imgteam > overlay_segmentation_mask

comparison overlay_segmentation_mask.xml @ 2:22e573b7dcb1 draft default tip

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"planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/overlay_segmentation_mask/ commit 0500f513ee291ae0f6fad32a0b4fad05cd59cb71"
author imgteam
date Sat, 26 Feb 2022 17:14:53 +0000
parents 8ad39f493587
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1:8ad39f493587 2:22e573b7dcb1
1 <tool id="ip_overlay_segmentation" name="Overlay Segmentation Mask" version="0.0.6"> 1 <tool id="ip_overlay_segmentation" name="Overlay Segmentation Mask" version="0.0.7" profile="20.05">
2 <description>Overlay Segmentation Mask</description> 2 <description>Overlay Segmentation Mask</description>
3 <requirements> 3 <requirements>
4 <requirement type="package" version="0.14.2">scikit-image</requirement> 4 <requirement type="package" version="0.18.1">scikit-image</requirement>
5 <requirement type="package" version="3.0.2">matplotlib</requirement> 5 <requirement type="package" version="3.3.4">matplotlib</requirement>
6 <requirement type="package" version="5.3.0">pillow</requirement> 6 <requirement type="package" version="1.20.2">numpy</requirement>
7 <requirement type="package" version="0.15.1">tifffile</requirement>
8 <requirement type="package" version="1.16.0">numpy</requirement>
9 </requirements> 7 </requirements>
10 <command detect_errors="aggressive"><![CDATA[ 8 <command detect_errors="aggressive"><![CDATA[
11 python '$__tool_directory__/overlay_segmentation_mask.py' 9 python '$__tool_directory__/overlay_segmentation_mask.py'
12 $greyscale 10 $greyscale
13 #if str($label_option.label) == '--label' 11 #if str($label_option.label) == '--label'
51 </tests> 49 </tests>
52 <help> 50 <help>
53 **What it does** 51 **What it does**
54 52
55 This tool overlays a segmentation mask over an image. 53 This tool overlays a segmentation mask over an image.
54
55 Note: This tool is deprecated and may not be supported in future. Please use the tool "Overlay Images" instead.
56 </help> 56 </help>
57 <citations> 57 <citations>
58 <citation type="doi">10.7717/peerj.453</citation>
59 </citations> 58 </citations>
60 </tool> 59 </tool>