Mercurial > repos > imgteam > permutate_axis
comparison permutate_axis.xml @ 0:0bbe34198e24 draft
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/permutate_axis/ commit c3f4b766f03770f094fda6bda0a5882c0ebd4581
| author | imgteam |
|---|---|
| date | Sat, 09 Feb 2019 14:42:29 -0500 |
| parents | |
| children | 5b82f2186244 |
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| -1:000000000000 | 0:0bbe34198e24 |
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| 1 <tool id="ip_permutate_axis" name="Permutate image" version="0.1"> | |
| 2 <description>along an axis</description> | |
| 3 <requirements> | |
| 4 <requirement type="package" version="0.14.2">scikit-image</requirement> | |
| 5 <requirement type="package" version="1.15.4">numpy</requirement> | |
| 6 </requirements> | |
| 7 <command> | |
| 8 <![CDATA[ | |
| 9 python '$__tool_directory__/permutate_axis.py' '$input' '$output' $permutate --axis $axis | |
| 10 ]]> | |
| 11 </command> | |
| 12 <inputs> | |
| 13 <param name="input" type="data" format="tiff" label="Binary Image File"/> | |
| 14 <param name="permutate" type="text" value="0,1,2" label="new channel order"> | |
| 15 <validator type="regex" message="Input has to be a sequence of axis, separated by commas">([0-4],)+[0-4]</validator> | |
| 16 </param> | |
| 17 <param name="axis" type="integer" value="0" label="concatenation axis" help="Concatenation axis (0-4)" /><!-- why not have a selection from 0 to 4?--> | |
| 18 </inputs> | |
| 19 <outputs> | |
| 20 <data format="tiff" name="output"/> | |
| 21 </outputs> | |
| 22 <tests> | |
| 23 <test> | |
| 24 <param name="input" value="galaxyIcon_noText.tif"/> | |
| 25 <output name="output" file="res.tif" ftype="tiff" compare="sim_size"/> | |
| 26 </test> | |
| 27 </tests> | |
| 28 <help> | |
| 29 **What it does** | |
| 30 | |
| 31 Permutates the image along a specified axis. | |
| 32 </help> | |
| 33 <citations> | |
| 34 <citation type="doi">10.1016/j.jbiotec.2017.07.019</citation> | |
| 35 </citations> | |
| 36 </tool> |