Mercurial > repos > imgteam > permutate_axis

comparison permutate_axis.py @ 1:5b82f2186244 draft

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planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/permutate_axis/ commit b2acc1845a25828181597fe5b6982fe116a7796d
author imgteam
date Mon, 22 Jul 2019 05:04:15 -0400
parents 0bbe34198e24
children 91e255c78eb5
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0:0bbe34198e24 1:5b82f2186244
7 7
8 def permutate_axis(input_image_path, output_image_path, axis, permutate): 8 def permutate_axis(input_image_path, output_image_path, axis, permutate):
9 images = [] 9 images = []
10 raw_image = skimage.io.imread(input_image_path, plugin='tifffile') 10 raw_image = skimage.io.imread(input_image_path, plugin='tifffile')
11 for i in permutate: 11 for i in permutate:
12 # TODO generalise 12 # TODO generalise
13 if axis == 0: 13 if axis == 0:
14 a_slice = raw_image[i] 14 a_slice = raw_image[i]
15 elif axis == 1: 15 elif axis == 1:
16 a_slice = raw_image[:,i] 16 a_slice = raw_image[:,i]
17 elif axis == 2: 17 elif axis == 2: