Mercurial > repos > imgteam > permutate_axis
comparison permutate_axis.xml @ 1:5b82f2186244 draft
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/permutate_axis/ commit b2acc1845a25828181597fe5b6982fe116a7796d
author | imgteam |
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date | Mon, 22 Jul 2019 05:04:15 -0400 |
parents | 0bbe34198e24 |
children | 7e7215e721af |
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0:0bbe34198e24 | 1:5b82f2186244 |
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1 <tool id="ip_permutate_axis" name="Permutate image" version="0.1"> | 1 <tool id="ip_permutate_axis" name="Permutate image" version="0.2"> |
2 <description>along an axis</description> | 2 <description>along an axis</description> |
3 <requirements> | 3 <requirements> |
4 <requirement type="package" version="0.14.2">scikit-image</requirement> | 4 <requirement type="package" version="0.14.2">scikit-image</requirement> |
5 <requirement type="package" version="1.15.4">numpy</requirement> | 5 <requirement type="package" version="1.15.4">numpy</requirement> |
6 <requirement type="package" version="0.15.1">tifffile</requirement> | |
6 </requirements> | 7 </requirements> |
7 <command> | 8 <command detect_errors="aggressive"> |
8 <![CDATA[ | 9 <![CDATA[ |
9 python '$__tool_directory__/permutate_axis.py' '$input' '$output' $permutate --axis $axis | 10 python '$__tool_directory__/permutate_axis.py' '$input' '$output' $permutate --axis $axis |
10 ]]> | 11 ]]> |
11 </command> | 12 </command> |
12 <inputs> | 13 <inputs> |
13 <param name="input" type="data" format="tiff" label="Binary Image File"/> | 14 <param name="input" type="data" format="tiff" label="Binary Image File"/> |
14 <param name="permutate" type="text" value="0,1,2" label="new channel order"> | 15 <param name="permutate" type="text" value="0,1,2" label="new channel order"> |
15 <validator type="regex" message="Input has to be a sequence of axis, separated by commas">([0-4],)+[0-4]</validator> | 16 <validator type="regex" message="Input has to be a sequence of axis, separated by commas">([0-4],)+[0-4]</validator> |
16 </param> | 17 </param> |