Mercurial > repos > imgteam > permutate_axis

comparison permutate_axis.py @ 2:91e255c78eb5 draft

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"planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/permutate_axis/ commit 3d389fdec0db29cf6fbd783c0501455bf624fa90"
author imgteam
date Wed, 18 Dec 2019 05:02:53 -0500
parents 5b82f2186244
children 7e7215e721af
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1:5b82f2186244 2:91e255c78eb5
1 import argparse 1 import argparse
2 import sys 2 import sys
3 import warnings 3 import warnings
4 import numpy as np 4 import numpy as np
5 import skimage.io 5 import skimage.io
6 import skimage.util 6 import skimage.util
7 7
8 def permutate_axis(input_image_path, output_image_path, axis, permutate): 8 def permutate_axis(input_image_path, output_image_path, axis, permutate):
9 images = [] 9 images = []
10 raw_image = skimage.io.imread(input_image_path, plugin='tifffile') 10 raw_image = skimage.io.imread(input_image_path, plugin='tifffile')
11 for i in permutate: 11 for i in permutate: