Mercurial > repos > imgteam > points2labelimage
comparison points2label.xml @ 0:dcc8c1d6af48 draft
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/points2labelimage/ commit c3f4b766f03770f094fda6bda0a5882c0ebd4581
| author | imgteam |
|---|---|
| date | Sat, 09 Feb 2019 14:44:10 -0500 |
| parents | |
| children | 9bd039f46843 |
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| -1:000000000000 | 0:dcc8c1d6af48 |
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| 1 <tool id="ip_points_to_labe" name="Points to Label" version="0.2"> | |
| 2 <description>Points to Label Image</description> | |
| 3 <requirements> | |
| 4 <requirement type="package" version="1.15.4">numpy</requirement> | |
| 5 <requirement type="package" version="0.14.2">scikit-image</requirement> | |
| 6 <requirement type="package" version="0.23.4">pandas</requirement> | |
| 7 </requirements> | |
| 8 <command> | |
| 9 <![CDATA[ | |
| 10 python '$__tool_directory__/points2label.py' '$input' '$output' '$org_file' $has_header | |
| 11 ]]> | |
| 12 </command> | |
| 13 <inputs> | |
| 14 <param name="input" type="data" format="tabular" label="Point CSV file"/> | |
| 15 <param name="org_file" type="data" format="tiff" label="Original label image file"/> | |
| 16 <param name="has_header" type="boolean" checked="false" truevalue="--has_header True" falsevalue="" optional="true" label="Does point file contain header?" /> | |
| 17 </inputs> | |
| 18 <outputs> | |
| 19 <data name="output" format="tiff"/> | |
| 20 </outputs> | |
| 21 <tests> | |
| 22 <test> | |
| 23 <param name="input" value="points.tsv"/> | |
| 24 <param name="org_file" value="galaxyIcon_noText.tif"/> | |
| 25 <output name="output" file="out.tif" ftype="tiff" compare="sim_size"/> | |
| 26 </test> | |
| 27 </tests> | |
| 28 <help> | |
| 29 **What it does** | |
| 30 | |
| 31 This tool converts points to a label image. | |
| 32 </help> | |
| 33 <citations> | |
| 34 <citation type="doi">10.1016/j.jbiotec.2017.07.019</citation> | |
| 35 </citations> | |
| 36 </tool> |