# HG changeset patch
# User imgteam
# Date 1713946385 0
# Node ID 6a8ae8cd71679ae0e8ea523db7fc1cdfe30e8210
# Parent 2f504e075496061bae033743841dcad527fb1982
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/projective_transformation/ commit c86a1b93cb7732f7331a981d13465653cc1a2790
diff -r 2f504e075496 -r 6a8ae8cd7167 projective_transformation.py
--- a/projective_transformation.py Thu Apr 04 15:26:07 2024 +0000
+++ b/projective_transformation.py Wed Apr 24 08:13:05 2024 +0000
@@ -9,6 +9,7 @@
import argparse
import warnings
+import giatools.io
import numpy as np
import pandas as pd
import skimage.color
@@ -47,7 +48,7 @@
def transform(moving_fn, fixed_fn, warp_mat, output_fn):
- moving = skimage.io.imread(moving_fn)
+ moving = giatools.io.imread(moving_fn)
nDims = len(moving.shape)
assert nDims in [2, 3, 4, 5, 6], 'this tool only supports up to 6 dimensions'
@@ -62,7 +63,7 @@
else:
isMulCh = False
- fixed = skimage.io.imread(fixed_fn)
+ fixed = giatools.io.imread(fixed_fn)
if fixed.shape[-1] in [3, 4] and len(fixed.shape) > 2:
hw_fixed = fixed.shape[-3:-1]
else:
diff -r 2f504e075496 -r 6a8ae8cd7167 projective_transformation.xml
--- a/projective_transformation.xml Thu Apr 04 15:26:07 2024 +0000
+++ b/projective_transformation.xml Wed Apr 24 08:13:05 2024 +0000
@@ -4,7 +4,7 @@
creators.xml
tests.xml
0.1.2
- 3
+ 4
@@ -21,6 +21,7 @@
numpy
scipy
tifffile
+ giatools