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planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/projective_transformation_points/ commit c045f067a57e8308308cf6329060c7ccd3fc372f
author imgteam
date Thu, 04 Apr 2024 15:26:12 +0000
parents 65e95d0b8838
children
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499ad4d9aa13 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/projective_transformation_points/ commit c045f067a57e8308308cf6329060c7ccd3fc372f
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1 <tool id="ip_projective_transformation_points" name="Perform projective transformation of point coordinates" license="MIT" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="20.05">
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2 <description></description>
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3 <macros>
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4 <import>creators.xml</import>
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5 <token name="@TOOL_VERSION@">0.1.1</token>
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6 <token name="@VERSION_SUFFIX@">3</token>
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7 </macros>
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8 <creator>
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9 <expand macro="creators/bmcv"/>
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10 </creator>
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11 <edam_operations>
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12 <edam_operation>operation_3443</edam_operation>
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13 </edam_operations>
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14 <xrefs>
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15 <xref type="bio.tools">galaxy_image_analysis</xref>
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16 </xrefs>
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17 <requirements>
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18 <requirement type="package" version="0.14.2">scikit-image</requirement>
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19 <requirement type="package" version="1.2.1">scipy</requirement>
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20 <requirement type="package" version="0.23.4">pandas</requirement>
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21 <requirement type="package" version="1.15.2">numpy</requirement>
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22 <requirement type="package" version="0.15.1">tifffile</requirement>
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23 </requirements>
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24 <command detect_errors="aggressive">
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25 <![CDATA[
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26 python '$__tool_directory__/projective_transformation_points.py'
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27 '$input'
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28 '$tmat'
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29 '$output'
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30 ]]>
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31 </command>
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32 <inputs>
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33 <param name="input" type="data" format="tabular" label="Point coordinates to be transformed" help="Must be a TSV file." />
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34 <param name="tmat" type= "data" format="tabular" label="Transformation matrix" help="Homogeneous transformation matrix (3⨉3)." />
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35 </inputs>
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36 <outputs>
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37 <data format="tabular" name="output" />
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38 </outputs>
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39 <tests>
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40 <test>
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41 <param name="input" value="in.tabular" />
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42 <param name="tmat" value="tmat.tabular" />
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43 <output name="output" value="out.tabular" ftype="tabular" compare="diff" />
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44 </test>
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45 </tests>
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46 <help>
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47
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48 **Performs projective transformation of point coordinates.**
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49
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50 This tool performs a projective transformation of point coordinates with/without labels.
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51
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52 The input point coordinates to be transformed must be in the following format:
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53
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54 **Column 1:** The horizontal coordinate.
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56 **Column 2:** The vertical coordinate.
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57
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58 **Further columns:** Point labels (numerical or categorical, optional).
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59
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60 The frist row of the table will be regarded as column headers.
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61
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62 </help>
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63 <citations>
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64 <citation type="doi">10.1016/j.jbiotec.2017.07.019</citation>
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65 </citations>
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66 </tool>