Mercurial > repos > imgteam > repeat_channels
diff repeat_channels.xml @ 0:7cdb50fee601 draft default tip
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/repeat_channels/ commit 60cf803236ef94f414056823688e6fd008b7a1b6
author | imgteam |
---|---|
date | Thu, 25 Apr 2024 10:57:53 +0000 |
parents | |
children |
line wrap: on
line diff
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/repeat_channels.xml Thu Apr 25 10:57:53 2024 +0000 @@ -0,0 +1,61 @@ +<tool id="repeat_channels" name="Convert single-channel to multi-channel image" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="22.05"> + <description>with NumPy</description> + <macros> + <import>creators.xml</import> + <import>tests.xml</import> + <token name="@TOOL_VERSION@">1.26.4</token> + <token name="@VERSION_SUFFIX@">0</token> + </macros> + <creator> + <expand macro="creators/bmcv"/> + </creator> + <edam_operations> + <edam_operation>operation_3443</edam_operation> + </edam_operations> + <xrefs> + <xref type="bio.tools">galaxy_image_analysis</xref> + </xrefs> + <requirements> + <requirement type="package" version="1.26.4">numpy</requirement> + <requirement type="package" version="0.18.1">scikit-image</requirement> + <requirement type="package" version="0.1">giatools</requirement> + </requirements> + <command><![CDATA[ + + ## Inputs + + python '$__tool_directory__/repeat_channels.py' + '$input' + '$count' + + ## Outputs + + ./output.tif + + ]]> + </command> + <inputs> + <param name="input" type="data" format="tiff,png" label="Input image (single-channel)" /> + <param name="count" type="integer" value="3" min="1" label="Number of channels" /> + </inputs> + <outputs> + <data format="tiff" name="output" from_work_dir="output.tif" /> + </outputs> + <tests> + <test> + <param name="input" value="input1.tif" /> + <param name="count" value="3" /> + <expand macro="tests/intensity_image_diff" name="output" value="input1_c3.tif" ftype="tiff" /> + </test> + </tests> + <help> + + **Convert single-channel to multi-channel image.** + + This tools converts a single-channel image to a multi-channel image by repeating the channel multiple times. + + </help> + <citations> + <citation type="doi">10.1038/s41586-020-2649-2</citation> + </citations> +</tool>