Mercurial > repos > imgteam > scale_image

comparison scale_image.xml @ 0:c4c76f1ebad2 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/scale_image/ commit c3f4b766f03770f094fda6bda0a5882c0ebd4581
author imgteam
date Sat, 09 Feb 2019 14:46:03 -0500
parents
children 3e4231ed875e
comparison
equal deleted inserted replaced
-1:000000000000 0:c4c76f1ebad2
1 <tool id="ip_scale_image" name="Scale Image" version="0.2">
2 <description>Scales image</description>
3 <requirements>
4 <requirement type="package" version="0.14.2">scikit-image</requirement>
5 <requirement type="package" version="1.15.4">numpy</requirement>
6 </requirements>
7 <command>
8 <![CDATA[
9 python '$__tool_directory__/scale_image.py' '$input' ./out.png
10 #if $use_scale_option.use_scale == 'true'
11 $use_scale_option.scale
12 #else if $use_scale_option.use_scale == 'false'
13 '[$use_scale_option.scale_x, $use_scale_option.scale_y]'
14 #end if
15 $order
16
17 ]]>
18 </command>
19 <inputs>
20 <param name="input" type="data" format="png" label="Image file"/>
21 <conditional name="use_scale_option"><!--a third option (using one integer as percentage scaling) could still be implemented-->
22 <param label="Lock scaling between image dimensions" name="use_scale" type="select">
23 <option selected="true" value="true">Lock</option>
24 <option value="false">Individual scales</option>
25 </param>
26 <when value="true">
27 <param name="scale" type="float" value="1.0" label="Scaling factor" />
28 </when>
29 <when value="false">
30 <param name="scale_x" type="integer" value="100" label="New height of the image in pixels" />
31 <param name="scale_y" type="integer" value="100" label="New width of the image in pixels" />
32 </when>
33 </conditional>
34 <param name="order" type="select" label="Interpolation method">
35 <option value="0">Nearest-neighbor</option>
36 <option value="1" selected="true">Bi-linear</option>
37 <option value="2">Bi-cubic</option>
38 </param>
39 </inputs>
40 <outputs>
41 <data format="png" name="output" from_work_dir="out.png"/>
42 </outputs>
43 <tests>
44 <test>
45 <param name="input" value="sample1.png"/> <!--continue here-->
46 <param name="use_scale_option.use_scale" value="false"/>
47 <param name="use_scale_option.scale_x" value="200"/>
48 <param name="use_scale_option.scale_y" value="150"/>
49 <param name="order" value="0"/>
50 <output name="output" value="out2.png" ftype="png" compare="sim_size"/>
51 </test>
52 </tests>
53 <help>
54 **What it does**
55
56 This tool scales an image using the scaling factor.
57 </help>
58 <citations>
59 <citation type="doi">10.1016/j.jbiotec.2017.07.019</citation>
60 </citations>
61 </tool>