Mercurial > repos > imgteam > segmetrics
comparison segmetrics.xml @ 3:c496306c1cba draft
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/segmetrics/ commit baee438adb94f6e8b6c3e45e8413c36f9d1dadee
author | imgteam |
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date | Sat, 08 Oct 2022 21:54:40 +0000 |
parents | 3a7310406943 |
children | 7989264b5780 |
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2:c90b52773d2e | 3:c496306c1cba |
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1 <tool id="ip_segmetrics" name="SegMetrics" version="0.11.3-1" profile="20.05"> | 1 <tool id="ip_segmetrics" name="SegMetrics" version="0.11.3-2" profile="20.05"> |
2 <description>image segmentation and object detection performance measures</description> | 2 <description>image segmentation and object detection performance measures</description> |
3 <requirements> | 3 <requirements> |
4 <requirement type="package" version="0.11.3">segmetrics</requirement> | 4 <requirement type="package" version="0.11.3">segmetrics</requirement> |
5 <requirement type="package" version="0.18.1">scikit-image</requirement> | 5 <requirement type="package" version="0.18.1">scikit-image</requirement> |
6 </requirements> | 6 </requirements> |
7 <command detect_errors="aggressive"> | 7 <command detect_errors="aggressive"> |
8 <![CDATA[ | 8 <![CDATA[ |
9 python '$__tool_directory__/run-segmetrics.py' | 9 python '$__tool_directory__/run-segmetrics.py' |
10 '$input_seg' | 10 '$input_seg' |
11 '$input_gt' | 11 '$input_gt' |
12 ./results.csv | 12 ./results.tsv |
13 $unzip | 13 $unzip |
14 $is_seg_unique | 14 $is_seg_unique |
15 $is_gt_unique | 15 $is_gt_unique |
16 $measures.dice | 16 $measures.dice |
17 $measures.seg | 17 $measures.seg |
64 <param name="fn" type="boolean" checked="true" truevalue="-measure-fn" falsevalue="" label="Missing objects per image" /> | 64 <param name="fn" type="boolean" checked="true" truevalue="-measure-fn" falsevalue="" label="Missing objects per image" /> |
65 </section> | 65 </section> |
66 | 66 |
67 </inputs> | 67 </inputs> |
68 <outputs> | 68 <outputs> |
69 <data format="csv" name="results" from_work_dir="results.csv" /> | 69 <data format="tsv" name="results" from_work_dir="results.tsv" /> |
70 </outputs> | 70 </outputs> |
71 <tests> | 71 <tests> |
72 <test> | 72 <test> |
73 <param name="input_seg" value="input2.png"/> | 73 <param name="input_seg" value="input2.png"/> |
74 <param name="input_gt" value="input1.png"/> | 74 <param name="input_gt" value="input1.png"/> |
75 <output name="results" value="results1.csv" ftype="csv" compare="diff"/> | 75 <output name="results" value="results1.tsv" ftype="tsv" compare="diff"/> |
76 <param name="is_seg_unique" value="True"/> | 76 <param name="is_seg_unique" value="True"/> |
77 <param name="is_gt_unique" value="True"/> | 77 <param name="is_gt_unique" value="True"/> |
78 </test> | 78 </test> |
79 <test> | 79 <test> |
80 <param name="input_seg" value="input1.zip"/> | 80 <param name="input_seg" value="input1.zip"/> |
81 <param name="input_gt" value="input2.zip"/> | 81 <param name="input_gt" value="input2.zip"/> |
82 <output name="results" value="results2.csv" ftype="csv" compare="diff"/> | 82 <output name="results" value="results2.tsv" ftype="tsv" compare="diff"/> |
83 <param name="is_seg_unique" value="True"/> | 83 <param name="is_seg_unique" value="True"/> |
84 <param name="is_gt_unique" value="True"/> | 84 <param name="is_gt_unique" value="True"/> |
85 <param name="unzip" value="True"/> | 85 <param name="unzip" value="True"/> |
86 </test> | 86 </test> |
87 </tests> | 87 </tests> |