Mercurial > repos > imgteam > slice_image

comparison slice_image.xml @ 1:8856a7c85e4c draft

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"planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/slice_image/ commit 3d389fdec0db29cf6fbd783c0501455bf624fa90"
author imgteam
date Wed, 18 Dec 2019 05:03:25 -0500
parents aacfbd7c4af6
children f312d414f234
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0:aacfbd7c4af6 1:8856a7c85e4c
1 <tool id="ip_slice_image" name="Slice Image" version="0.2"> 1 <tool id="ip_slice_image" name="Slice Image" version="0.3">
2 <description>into smaller patches</description> 2 <description>into smaller patches</description>
3 <requirements> 3 <requirements>
4 <requirement type="package" version="0.14.2">scikit-image</requirement> 4 <requirement type="package" version="0.14.2">scikit-image</requirement>
5 <requirement type="package" version="1.15.4">numpy</requirement> 5 <requirement type="package" version="1.15.4">numpy</requirement>
6 <!-- <requirement type="package" version="1.1.0">scipy</requirement> --> 6 <requirement type="package" version="1.1.0">scipy</requirement>
7 <requirement type="package" version="0.15.1">tifffile</requirement>
7 </requirements> 8 </requirements>
8 <command> 9 <command detect_errors="aggressive">
9 <![CDATA[ 10 <![CDATA[
10 mkdir ./out && 11 mkdir ./out &&
11 python '$__tool_directory__/slice_image.py' 12 python '$__tool_directory__/slice_image.py'
12 '$input_file' ./out 13 '$input_file' ./out
13 --stride $stride --window_size $patch_size --bg_thresh $bg_thresh 14 --stride $stride --window_size $patch_size --bg_thresh $bg_thresh