Mercurial > repos > imgteam > split_labelmap

comparison split_labelmap.xml @ 0:597b7ef44b05 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/split_labelmaps/ commit c3f4b766f03770f094fda6bda0a5882c0ebd4581
author imgteam
date Sat, 09 Feb 2019 14:47:34 -0500
parents
children 9db1c22dbe17
comparison
equal deleted inserted replaced
-1:000000000000 0:597b7ef44b05
1 <tool id="ip_split_labelmap" name="Split Labelmap" version="0.1">
2 <description></description>
3 <requirements>
4 <requirement type="package" version="0.14.2">scikit-image</requirement>
5 <requirement type="package" version="1.15.4">numpy</requirement>
6 <requirement type="package" version="0.15.1">tifffile</requirement> <!--not sure if this is required-->
7 </requirements>
8 <command>
9 <![CDATA[
10 python '$__tool_directory__/split_labelmap.py' '$input' '$output'
11 ]]>
12 </command>
13 <inputs>
14 <param name="input" type="data" format="tiff,png,jpg,bmp" label="Image containing labels"/>
15 </inputs>
16 <outputs>
17 <data name="output" format="tiff"/>
18 </outputs>
19 <tests>
20 <test>
21 <param name="input" value="sample_seg.tif"/>
22 <output name="output" value="out.tif" ftype="tiff" compare="sim_size"/>
23 </test>
24 </tests>
25 <help>
26 **What it does**
27
28 Takes a labeled image and outputs a similar file where the labeled parts
29 of the image that touch (or overlap) are separated by at least 1 pixel (at most 2).
30 </help>
31 <citations>
32 <citation type="doi">10.1016/j.jbiotec.2017.07.019</citation>
33 </citations>
34 </tool>