Mercurial > repos > imgteam > split_labelmap

diff split_labelmap.py @ 3:0e7be7c35f15 draft default tip

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planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/split_labelmaps/ commit c86a1b93cb7732f7331a981d13465653cc1a2790
author imgteam
date Wed, 24 Apr 2024 08:13:26 +0000
parents 9db1c22dbe17
children
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--- a/split_labelmap.py	Thu Apr 04 15:26:45 2024 +0000
+++ b/split_labelmap.py	Wed Apr 24 08:13:26 2024 +0000
@@ -1,11 +1,11 @@
 import argparse
 import warnings
 
+import giatools.io
 import numpy as np
 import scipy
 import skimage.draw
 import skimage.io
-from imageio import imread as io_imread
 from skimage.measure import regionprops
 
 # split_label_image takes a label image and outputs a similar file with the given name where the labeled
@@ -15,7 +15,7 @@
 def split_labelmap(labelmap, outputfile):
 
     # Information from the label map.
-    label_img = io_imread(labelmap)
+    label_img = giatools.io.imread(labelmap)
     xtot, ytot = label_img.shape
     props = regionprops(label_img)
     N = len(props)